Browsing by Author "Amara, Najette"
Now showing items 1-3 of 3
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Article
Computational protein design with a generalized born solvent model: Application to asparaginyl-tRNA synthetase
Polydorides, Savvas; Amara, Najette; Aubard, C.; Plateau, P.; Simonson, T.; Archontis, Georgios Z. (2011)Computational Protein Design (CPD) is a promising method for high throughput protein and ligand mutagenesis. Recently, we developed a CPD method that used a polar-hydrogen energy function for protein interactions and a ...
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Article
Computational protein design: The proteus software and selected applications
Simonson, Thomas; Gaillard, Thomas; Mignon, David; Schmidt, am Busch; Lopes, Anne; Amara, Najette; Polydorides, Savvas; Sedano, Audrey; Druart, Karen; Archontis, Georgios Z. (2013)
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Article
Computational protein design: The proteus software and selected applications
Simonson, T.; Gaillard, T.; Mignon, D.; Schmidt Am Busch, M.; Lopes, A.; Amara, Najette; Polydorides, Savvas; Sedano, A.; Druart, Karen; Archontis, Georgios Z. (2013)We describe an automated procedure for protein design, implemented in a flexible software package, called Proteus. System setup and calculation of an energy matrix are done with the XPLOR modeling program and its sophisticated ...