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Browsing by Subject "Computer Simulation"

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    • Article  

      Accommodation of Failures in the F-16 Aircraft Using Adaptive Control 

      Ahmed-Zaid, F.; Ioannou, Petros A.; Gousman, K.; Rooney, R. (1991)

    • Conference Object  

      Accomodation of failures in the flight control system of the F-16 aircraft using adaptive control 

      Ahmed-Zaid, F.; Ioannou, Petros A.; Gousman, K.; Rooney, R. (Publ by American Automatic Control Council, 1990)
      The effect of surface and hardware failure on the flight control system of the F-16 fighter aircraft is examined. In the absence of failures and unpredictable changes, the controller, which is based on gains scheduling, ...

    • Article  

      Binding free energies and free energy components from molecular dynamics and Poisson-Boltzmann calculations. Application to amino acid recognition by aspartyl-tRNA synthetase 

      Archontis, Georgios Z.; Simonson, T.; Karplus, M. (2001)
      Specific amino acid binding by aminoacyl-tRNA synthetases (aaRS) is necessary for correct translation of the genetic code. Engineering a modified specificity into aminoacyl-tRNA synthetases has been proposed as a means to ...

    • Article  

      A Biophysical Model of Endocannabinoid-Mediated Short Term Depression in Hippocampal Inhibition 

      Zachariou, Margarita; Alexander, S. P. H.; Coombes, S.; Christodoulou, Chris C. (2013)
      Memories are believed to be represented in the synaptic pathways of vastly interconnected networks of neurons. The plasticity of synapses, that is, their strengthening and weakening depending on neuronal activity, is ...

    • Article  

      Bootstrap confidence bands for spectra and cross-spectra 

      Politis, Dimitris Nicolas; Romano, J. P.; Lai, T. -L (1992)
      A new nonparametric method for setting confidence intervals and confidence bands for spectra and cross-spectra of stationary weakly dependent time series is presented. The proposed methodology involves using a bootstrap ...

    • Article  

      Combining two strategies to improve perfusion and drug delivery in solid tumors 

      Stylianopoulos, T.; Jain, R. K. (2013)
      Blood perfusion in tumors can be significantly lower than that in the surrounding normal tissue owing to the leakiness and/or compression of tumor blood vessels. Impaired perfusion reduces oxygen supply and results in a ...

    • Article  

      Computational predictions of the tensile properties of electrospun fibre meshes: Effect of fibre diameter and fibre orientation 

      Barocas, V. Η; Stylianopoulos, T.; Bashur, C. A.; Goldstein, A. S.; Guelcher, S. A. (2008)
      The mechanical properties of biomaterial scaffolds are crucial for their efficacy in tissue engineering and regenerative medicine. At the microscopic scale, the scaffold must be sufficiently rigid to support cell adhesion, ...

    • Article  

      Computational sidechain placement and protein mutagenesis with implicit solvent models 

      Lopes, A.; Alexandrov, A.; Bathelt, C.; Archontis, Georgios Z.; Simonson, T. (2007)
      Structure prediction and computational protein design should benefit from accurate solvent models. We have applied implicit solvent models to two problems that are central to this area. First, we performed sidechain placement ...

    • Article  

      Conformational analysis of compstatin analogues with molecular dynamics simulations in explicit water 

      Tamamis, Phanourios; Skourtis, Spiros S.; Morikis, D.; Lambris, J. D.; Archontis, Georgios Z. (2007)
      The cyclic 13-residue peptide compstatin is a potential therapeutic agent against the unregulated activation of the complement system. A thorough knowledge of its structural and dynamical properties in solution may assist ...

    • Article  

      Dielectric relaxation in an enzyme active site: Molecular dynamics simulations interpreted with a macroscopic continuum model 

      Archontis, Georgios Z.; Simonson, T. (2001)
      Dielectric relaxation plays an important role in many chemical processes in proteins, including acid-base titration, ligand binding, and charge transfer reactions. Its complexity makes experimental characterization difficult, ...

    • Article  

      Free energy simulations: The meaning of the individual contributions from a component analysis 

      Boresch, S.; Archontis, Georgios Z.; Karplus, M. (1994)
      A theoretical analysis is made of the decomposition into contributions from individual interactions of the free energy calculated by thermodynamic integration. It is demonstrated that such a decomposition, often referred ...

    • Article  

      Glycogen phosphorylase inhibitors: A free energy perturbation analysis of glucopyranose spirohydantoin analogues 

      Archontis, Georgios Z.; Watson, K. A.; Xie, Q.; Andreou, Georgia; Chrysina, Evangelia D.; Zographos, Spyros E.; Oikonomakos, Nikos G.; Karplus, M. (2005)
      GP catalyzes the phosphorylation of glycogen to Glc-1-P. Because of its fundamental role in the metabolism of glycogen, GP has been the target for a systematic structure-assisted design of inhibitory compounds, which could ...

    • Article  

      Identification of a series of novel derivatives as potent HCV inhibitors by a ligand-based virtual screening optimized procedure 

      Melagraki, G.; Afantitis, Antreas; Sarimveis, H.; Koutentis, Panayiotis Andreas; Markopoulos, J.; Igglessi-Markopoulou, O. (2007)
      This paper presents the results of a ligand-based virtual screening optimized procedure on 98 compounds which have been recently evaluated as inhibitors of genotype 1 HCV polymerase. First, quantitative structure-activity ...

    • Article  

      In Vitro localized release of thermosensitive liposomes with ultrasound-induced hyperthermia 

      Mannaris, Christophoros; Efthymiou, Eleni; Meyre, Marie-Edith; AVERKIOU, MICHALAKIS A. (2013)

    • Article  

      Inactivation of the glutamine/amino acid transporter ASCT2 by 1,2,3-dithiazoles: Proteoliposomes as a tool to gain insights in the molecular mechanism of action and of antitumor activity 

      Oppedisano, F.; Catto, M.; Koutentis, Panayiotis Andreas; Nicolotti, O.; Pochini, L.; Koyioni, Maria G.; Introcaso, A.; Michaelidou, Sophia S.; Carotti, A.; Indiveri, C. (2012)
      The ASCT2 transport system catalyses a sodium-dependent antiport of glutamine and other neutral amino acids which is involved in amino acid metabolism. A library of 1,2,3-dithiazoles was designed, synthesized and evaluated ...

    • Article  

      Learning systems in biosignal analysis 

      Schizas, Christos N.; Pattichis, Constantinos S. (1997)
      In biosignal analysis, the utility of artificial neural networks (ANN) in classifying electromyographic (EMG) data trained with the momentum back propagation algorithm has recently been demonstrated. In the current study, ...

    • Conference Object  

      Model reference adaptive control for plants with unknown relative degree 

      Tao, G.; Ioannou, Petros A. (Publ by IEEE, 1989)
      One of the basic assumptions in stable model reference adaptive control is that the relative degree n* of the modeled part of the plant is known exactly and matches that of the reference model. The authors relax this ...

    • Article  

      Modeling the effects of toxins in metabolic networks 

      Tamaddoni-Nezhad, A.; Chaleil, R.; Kakas, Antonis C.; Sternberg, M.; Nicholson, J.; Muggleton, S. (2007)

    • Article  

      Molecular optimization using computational multi-objective methods 

      Nicolaou, Christos A.; Brown, N.; Pattichis, Constantinos S. (2007)
      Improving the profile of a molecule for the drug-discovery process requires the simultaneous optimization of numerous, often competing objectives. Traditionally, standard chemo-informatics methods ignored this problem and ...

    • Conference Object  

      Non-linear robust adaptive control of a SCARA manipulator 

      Chassikos, Anastassios G.; Pak, H. Ali; Ioannou, Petros A. (Publ by IEEE, 1989)
      A nonlinear adaptive controller is presented for manipulator tracking control. The controller is shown to be robust with respect to jump parameter changes such as payload variations. A benchmark model of a two-degrees-of-freedom ...

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